A mobile application on performing blast analysis and local alignment
This thesis report is submitted in partial fulfillment of the requirements for the degree of Bachelor of Science in Computer Science and Engineering, 2015.
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BRAC University
2016
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| Sarrera elektronikoa: | http://hdl.handle.net/10361/4664 |
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10361-4664 |
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10361-46642022-01-26T10:08:18Z A mobile application on performing blast analysis and local alignment Kiron, Md. Ismail Sumon, Md. Enamul Haque Mourey, Jannatul Maksuda Ullah, Md. Zayed Computer science and engineering BLAST Smith-Waterman Protein sequence Aalignment Android Java This thesis report is submitted in partial fulfillment of the requirements for the degree of Bachelor of Science in Computer Science and Engineering, 2015. In this ever-fast running modern world of technologies, bioinformatics is not lagging behind. It is now possible to connect one’s smart phone to the huge database of bioinformatics where one can find thousands of gene and organism information in a few seconds. This project of an Android mobile application is another dimension that has been added to the features of smart phones. This mobile app will allow the researchers and the students in the field of bioinformatics to have access to the NCBI website’s BLAST protein sequences as well as the Blosum62 matrix used for the Smith-Waterman algorithm to identify and deduce similarities between sequences. Local alignment and global alignment features were selected for the application. Upon testing of the programming language Java was found to be the most optimal language. On the basis of time complexity, space complexity etc. Smith-Waterman and BLAST algorithms were chosen for the application. First the algorithms were implemented for the computer system using Java. This was done in two parts, firstly implementation of the algorithms and secondly parsing data from the database server. Gradually the program was incorporated into smart phone system. Finally, the application was evaluated in the smart phone system using both sequence input and accession ID input of protein sequences. The results obtained from the app in the smart phone system were compared to the existing computer system which proved that new system is providing the same results. In future this app will be expanded to other platforms of mobile operating systems and additional functions will be added. 2016-01-03T15:42:31Z 2016-01-03T15:42:31Z 2015 Thesis ID 12101076 ID 15341034 ID14101270 ID 12101119 http://hdl.handle.net/10361/4664 en application/pdf BRAC University |
| institution |
Brac University |
| collection |
Institutional Repository |
| language |
English |
| topic |
Computer science and engineering BLAST Smith-Waterman Protein sequence Aalignment Android Java |
| spellingShingle |
Computer science and engineering BLAST Smith-Waterman Protein sequence Aalignment Android Java Kiron, Md. Ismail Sumon, Md. Enamul Haque Mourey, Jannatul Maksuda Ullah, Md. Zayed A mobile application on performing blast analysis and local alignment |
| description |
This thesis report is submitted in partial fulfillment of the requirements for the degree of Bachelor of Science in Computer Science and Engineering, 2015. |
| format |
Thesis |
| author |
Kiron, Md. Ismail Sumon, Md. Enamul Haque Mourey, Jannatul Maksuda Ullah, Md. Zayed |
| author_facet |
Kiron, Md. Ismail Sumon, Md. Enamul Haque Mourey, Jannatul Maksuda Ullah, Md. Zayed |
| author_sort |
Kiron, Md. Ismail |
| title |
A mobile application on performing blast analysis and local alignment |
| title_short |
A mobile application on performing blast analysis and local alignment |
| title_full |
A mobile application on performing blast analysis and local alignment |
| title_fullStr |
A mobile application on performing blast analysis and local alignment |
| title_full_unstemmed |
A mobile application on performing blast analysis and local alignment |
| title_sort |
mobile application on performing blast analysis and local alignment |
| publisher |
BRAC University |
| publishDate |
2016 |
| url |
http://hdl.handle.net/10361/4664 |
| work_keys_str_mv |
AT kironmdismail amobileapplicationonperformingblastanalysisandlocalalignment AT sumonmdenamulhaque amobileapplicationonperformingblastanalysisandlocalalignment AT moureyjannatulmaksuda amobileapplicationonperformingblastanalysisandlocalalignment AT ullahmdzayed amobileapplicationonperformingblastanalysisandlocalalignment AT kironmdismail mobileapplicationonperformingblastanalysisandlocalalignment AT sumonmdenamulhaque mobileapplicationonperformingblastanalysisandlocalalignment AT moureyjannatulmaksuda mobileapplicationonperformingblastanalysisandlocalalignment AT ullahmdzayed mobileapplicationonperformingblastanalysisandlocalalignment |
| _version_ |
1814307386744111104 |