Genomic characterization of environmental Klebsiella pneumoniae through whole genome sequencing

Genomic characterization of environmental Klebsiella pneumoniae through whole genome sequencing

This thesis submitted to the Department of Mathematics and Natural Sciences in partial fulfillment of the requirements for the degree of Master of Science in Biotechnology, 2024.

Manylion Llyfryddiaeth
Prif Awdur:	Sharmin, Mehbooba
Awduron Eraill:	Naser, Iftekhar Bin
Fformat:	Traethawd Ymchwil
Iaith:	English
Cyhoeddwyd:	Brac University 2024
Pynciau:	Klebsiella pneumoniae Antimicrobial Susceptibility Testing (AST) Whole Genome Sequencing (WGS) Sanger sequencing Klebsiella pneumoniae. Genomic characterization > mapping > Bangladesh.
Mynediad Ar-lein:	http://hdl.handle.net/10361/24010

Eitemau Tebyg

Principles of genome analysis and genomics /
gan: Primrose, S. B.
Cyhoeddwyd: (2003)

In silico drug designing against Klebsiella pneumoniae adhesin protein
gan: Hoq, Muntasirul
Cyhoeddwyd: (2019)

Evaluation of MicrocinE492 gene presence in Klebsiella pneumoniae isolated from clinical samples.
gan: Islam, Faria
Cyhoeddwyd: (2019)

Isolation and characterization of Klebsiella pneumoniae from medical waste and adjoining community water
gan: Selim, Sadia Binte, et al.
Cyhoeddwyd: (2023)

A prospective study on the efficiency of ciprofloxacin in combination with chloramphenicol and probiotics against multiple antibiotics resistant Klebsiella pneumoniae
gan: Ahmed, Akash
Cyhoeddwyd: (2018)

Prevalence and molecular characterization of extended spectrum Beta-Lactamase producing multidrug-resistant Pseudomonas aeruginosa and Klebsiella pneumoniae isolates
gan: Afsana, Sadia
Cyhoeddwyd: (2018)

Study of the antimicrobial activities of the bark extract of cinnamomum verum on multi drug resistant klebsiella pneumoniae and enterobacter agglomerans
gan: Mahmud-Un-Nabi, Mohammad Al
Cyhoeddwyd: (2015)

The combined effect of Moxifloxacin and Ciprofloxacin against multidrug-resistant Klebsiella pneumoniae
gan: Hossain, Mehrin, et al.
Cyhoeddwyd: (2022)

Comparative study on the antibacterial activities of neem oil, mustard oil and black seed oil against staphylococcus aureus, klebsiella pneumoniae, bacillus cereus, salmonella typhi and pseudomonas aeruginosa
gan: Shova, Nishat Anzum
Cyhoeddwyd: (2017)

Isolation of Klebsiella pneumoniae and Acinetobacter baumannii from street vended cut fruits sold in Dhaka city of Bangladesh and their antibiotic susceptibility pattern
gan: Farid(Safa), Saima Binta, et al.
Cyhoeddwyd: (2024)

Analysis of multidrug resistant Klebsiella pneumoniae and Enterobacter aggalomerans isolates from under five children suffering from acute respiratory infections in Dhaka, Bangladesh.
gan: Chowdhury, Samina Kabir
Cyhoeddwyd: (2015)

Combined effect of Cefixime and Azithromycin against multiple antibiotics resistant Klebsiella pneumoniae and Pseudomonas aeruginosa
gan: Salahuddin, Fariba
Cyhoeddwyd: (2020)

Isolation and characterization of bacteriophage from environmental water samples specific for Klebsiella pneumoniae
gan: Roy, Arka
Cyhoeddwyd: (2018)

Isolation of Lytic Bacteriophages from Environmental water samples specific to Vibrio cholerae; software-based analysis of whole-genome using bioinformatics tools
gan: Arthi, Safwana Murshed
Cyhoeddwyd: (2021)

Diversity of salmonella typhi-phages in Dhaka city through whole genome sequencing
gan: Islam, Shuborno
Cyhoeddwyd: (2024)

Virulence determinants and antibiotic resistance of Extended-Spectrum Beta-lactamase (ESBL) producing Klebsiella pneumoniae Isolated from hospital environment
gan: Costa, Dorin Teresa D.
Cyhoeddwyd: (2020)

Prevalence of Carbapenem-resistant Klebsiella pneumoniae in vegetable and water samples in Dhaka South
gan: Raymond, Mugenyi, et al.
Cyhoeddwyd: (2022)

Principles of gene manipulation and genomics /
gan: Primrose, S. B.
Cyhoeddwyd: (2006)

Detection Extended Spectrum β-Lactamase (ESBL) and Carbapenemase encoding Klebsiella pneumoniae isolates from hospital effluent wastewater and hospital adjacent community tap water in Dhaka metropolitan city
gan: Siddique, Sifat Sarwa, et al.
Cyhoeddwyd: (2023)

Method optimization for isolation of Klebsiella Bacteriophage from soil samples
gan: Khan, Zumana Hayat
Cyhoeddwyd: (2021)

The antibacterial activities of Peppermint oil, Mustard oil and Clove oil on Klebsiella pneumonia, Acinetobacter baumannii, and Pseudomonas taetrolens
gan: Meem, Umara
Cyhoeddwyd: (2022)

Detection of multidrug-resistant Klebsiella pneumoniae in chicken samples collected from wet markets of Dhaka City
gan: Turna, Adrita Saha, et al.
Cyhoeddwyd: (2023)

The prevalence of multi-drug-resistant staphylococcus aureus and klebsiella pneumoniae in cooked meat samples collected from hospital cafeterias in the Dhaka city corporation area
gan: Hoque, Mahmuda, et al.
Cyhoeddwyd: (2024)

Genomes 3 /
gan: Brown, T. A. (Terence A.)
Cyhoeddwyd: (2007)

Isolation of Klebsiella pneumoniae from water and hand swabs of vegetable vendors collected from the wet markets of Dhaka city
gan: Zaman, Afsana, et al.
Cyhoeddwyd: (2024)

Carbapenem resistance gene Ppofiling in Klebsiella pneumoniae isolated from clinical and non-clinical (water and vegetables) samples
gan: Neha, Afra Anan, et al.
Cyhoeddwyd: (2024)

Seqdev: an algorithm for constructing genetic elements using comparative assembly
gan: Rahman, Tasnim, et al.
Cyhoeddwyd: (2017)

The dynamic genome
gan: Fontdevila, Antonio

A descriptive review on Monkeypox virus from past to present
gan: Halder, Angelina Samantha
Cyhoeddwyd: (2024)

Isolation of Enterobacter spp. and Klebsiella pneumoniae from ready-to-eat commercially sold frozen nuggets sold in Dhaka
gan: Banik, Aditya, et al.
Cyhoeddwyd: (2024)

Pan-genome analysis of Alistipes Genomes: Exploration of diversity and pathogenicity
gan: Nath Tonmoy, Joy Deb
Cyhoeddwyd: (2023)

The combined effect of Levofloxacin and Azithromycin against multidrug-resistant Acinetobacter baumannii, Klebsiella pneumoniae, and Pseudomonas aeruginosa.
gan: Belal, Progga Parmita
Cyhoeddwyd: (2023)

Statistical theory and methods for evolutionary genomics
gan: Gu, Xun

Briefings in Functional Genomics

Briefings in Functional Genomics

A review on the causative agents, risk factors and management of ventilator associated Pneumonia: from South Asian perspective
gan: Naboni, Nahian Sanjida
Cyhoeddwyd: (2022)

Prevalence of different variants of Klebsiella pneumoniae in urine samples: a review
gan: Hossain, Mahi Tasnim
Cyhoeddwyd: (2024)

Aging of the genome
gan: Vijg, Jan

Ancestral sequence reconstruction

Analysis and comparison between the Genome of CRISPR bacteriophages
gan: Muntaha, Mumtasin
Cyhoeddwyd: (2021)