Comparison of genotypic and phenotypic method for detection of Enterotoxigenic Escheichia coli isolated from diarrheal patients
This thesis report is submitted in partial fulfillment of the requirement for the degree of Masters of Science in Biotechnology, 2010
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BRAC University
2012
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| オンライン･アクセス: | http://hdl.handle.net/10361/1653 |
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10361-16532019-09-30T04:21:56Z Comparison of genotypic and phenotypic method for detection of Enterotoxigenic Escheichia coli isolated from diarrheal patients Alam, Farzana Choudhury, Prof. Naiyyum Ali, Prof. Liaquat Hassan, Dr. Zahid Department of Mathematical and Natural Science, BRAC University Biotechnology This thesis report is submitted in partial fulfillment of the requirement for the degree of Masters of Science in Biotechnology, 2010 Cataloged from PDF version of thesis report. Includes bibliographical references (page 48-57). Enterotoxigenic Escherichia coli (ETEC) is one of the main causes of childhood diarrhea and in travelers in developing countries . ETEC expresses one or both of two different enterotoxin subtypes : heat-stable toxins (ST), heat-labile toxin (LT) and more than 25 different colonization factors (CFs) that mediate adherence to the intestinal cell wall. A total number of 3459 stool specimens were tested from patients enrolled in the 2% routine surveillance system in ICDDR, B during the period of March , 2009 to July, 2010 and 10% (n=364) ETEC strains were detected at the Immunology Laboratory. Genotypic, multiplex-PCR and phenotypic , GM 1-enzyme-linked immunosorbent assay (GMIELISA) method were chosen to compare those isolated strains . Immuno Dot blot assay using specific monoclonal antibodies (MAbs) was done for the detection of colonization factors (CFs). Thirty strains have shown discrepancy in results among 364 ETEC strains. In which , 17% (n=5) was positive for heat stable toxin (ST), 10% (n=3) was positive for the heat labile toxin (LT), and 73% (n=22) was positive for both LT and ST toxin in case of PCR method but in ELISA, LT was found 17%, ST was 33% and LT/ST was 37%. About 67% of ETEC strains from stool specimens were colonization factor (CF) positive. Of these , 40% of LT toxin, 70% of ST toxin and 55 % of LT/ST toxin producing ETEC strains were CF positive . Among different colonization factors CS5 + CS6 and CS14 were the predominant phenotypes, followed by CS6, CFA/I, CS 17, CS1+CS3+CS21, CS2+CS3+CS21 in terms of occurrence whereas , CS2 + CS3 expressing ETEC strains were less frequently isolated from stool specimens . We did not find a very good similarity in results derived from genotypic and phenotypic methods . About 13% of PCR positive strains were negative by ELISA among those 30 strains . In PCR, ST was 17% whereas 33% found in ELISA and LT was 10% by PCR whereas 17% found in ELISA. In conclusion , we therefore did not find similar rates of LT and ST by the PCR method; it might due to low concentration of DNA in template that was prepared . It is possible that either the eltB or estA gene is present as a silent gene or, alternatively , that the levels of expression of the gene for these toxin are so low that the toxin was not detected by the ELISA method. Thus in future study, rRT-PCR can be carried out to evaluate genotypic and phenotypic toxin results specificity. M. Biotechnology 2012-03-06T05:53:39Z 2012-03-06T05:53:39Z 2010 2010-11 Thesis ID 09276002 http://hdl.handle.net/10361/1653 BRAC University thesis are protected by copyright. They may be viewed from this source for any purpose, but reproduction or distribution in any format is prohibited without written permission. 57 pages application/pdf BRAC University |
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Brac University |
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Institutional Repository |
| topic |
Biotechnology |
| spellingShingle |
Biotechnology Alam, Farzana Comparison of genotypic and phenotypic method for detection of Enterotoxigenic Escheichia coli isolated from diarrheal patients |
| description |
This thesis report is submitted in partial fulfillment of the requirement for the degree of Masters of Science in Biotechnology, 2010 |
| author2 |
Choudhury, Prof. Naiyyum |
| author_facet |
Choudhury, Prof. Naiyyum Alam, Farzana |
| format |
Thesis |
| author |
Alam, Farzana |
| author_sort |
Alam, Farzana |
| title |
Comparison of genotypic and phenotypic method for detection of Enterotoxigenic Escheichia coli isolated from diarrheal patients |
| title_short |
Comparison of genotypic and phenotypic method for detection of Enterotoxigenic Escheichia coli isolated from diarrheal patients |
| title_full |
Comparison of genotypic and phenotypic method for detection of Enterotoxigenic Escheichia coli isolated from diarrheal patients |
| title_fullStr |
Comparison of genotypic and phenotypic method for detection of Enterotoxigenic Escheichia coli isolated from diarrheal patients |
| title_full_unstemmed |
Comparison of genotypic and phenotypic method for detection of Enterotoxigenic Escheichia coli isolated from diarrheal patients |
| title_sort |
comparison of genotypic and phenotypic method for detection of enterotoxigenic escheichia coli isolated from diarrheal patients |
| publisher |
BRAC University |
| publishDate |
2012 |
| url |
http://hdl.handle.net/10361/1653 |
| work_keys_str_mv |
AT alamfarzana comparisonofgenotypicandphenotypicmethodfordetectionofenterotoxigenicescheichiacoliisolatedfromdiarrhealpatients |
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1814309642399907840 |