Identifying the best metrics to find the best quality clusters of genes from gene expression data

Identifying the best metrics to find the best quality clusters of genes from gene expression data

This thesis is submitted in partial fulfillment of the requirements for the degree of Bachelor of Science in Computer Science, 2019.

Manylion Llyfryddiaeth
Prif Awduron:	Choudhury, Joydhriti, Roshni, Tanzima Rahman, Chowdhury, Md. Tawhidul Islam, Rayon, Raihanoor Reza
Awduron Eraill:	Mottalib, Md. Abdul
Fformat:	Traethawd Ymchwil
Iaith:	English
Cyhoeddwyd:	Brac University 2019
Pynciau:	Bioinformatics Microarray Gene expression Phylogenetic tree Hierarchical clustering Distance metric Linkage method Cluster analysis.
Mynediad Ar-lein:	http://hdl.handle.net/10361/12810

Eitemau Tebyg

Qualitative classification of the breast cancer genome and clustering of the cancer gene network
gan: Fatema, Kaniz, et al.
Cyhoeddwyd: (2019)

The economics of clusters

Anomaly clustering based on correspondence analysis
gan: Islam, Humayra
Cyhoeddwyd: (2018)

Extractive text summarization using Fuzzy-c-means clustering
gan: Gani, Shafiul
Cyhoeddwyd: (2019)

A study of Osteosarcoma gene profile
gan: Arka, Sadib Md.
Cyhoeddwyd: (2022)

A new approach for processing X-ray data for detecting mini-halos in galaxy clusters
gan: Jafar, Zareef, et al.
Cyhoeddwyd: (2021)

Analysis on dengue severity using machine learning approach
gan: Sayeed, Sanjana, et al.
Cyhoeddwyd: (2021)

Integration of data clustering to intelligent email classifier
gan: Zisan, Shahriar Ahmed
Cyhoeddwyd: (2019)

Cluster analysis /
gan: Aldenderfer, Mark S.
Cyhoeddwyd: (1984)

Competition, competitive advantage, and clusters

Clustering web pages based on doc type structure in a distributed manner
gan: Kader, Kazi Samiul, et al.
Cyhoeddwyd: (2015)

A fast tree based cluster labeling algorithm for Monte Carlo simultaitons
gan: Kamal, Marzuk M., et al.
Cyhoeddwyd: (2010)

Implementing temporally coherent clustering on student activity to predict exam performance & optimizing the learning pathway through markov chain analysis
gan: Anough, Ahmed Saquif Alam, et al.
Cyhoeddwyd: (2019)

Reconstructing gene regulatory network with enhanced particle swarm optimization
gan: Sultana, Rezwana, et al.
Cyhoeddwyd: (2016)

A study of glioblastoma gene profile
gan: Nabila, Nusrat Jahan
Cyhoeddwyd: (2024)

A holistic approach to promoting early child development: A cluster randomised trial of a group-based, multicomponent intervention in rural Bangladesh
gan: Pitchik, Helen O, et al.
Cyhoeddwyd: (2022)

Site planning for cluster housing /
gan: Untermann, Richard K.
Cyhoeddwyd: (1977)

Engagement of husbands in a maternal nutrition program substantially contributed to greater intake of micronutrient supplements and dietary diversity during pregnancy: Results of a cluster-randomized program evaluation in Bangladesh
gan: Nguyen, Phuong Hong, et al.
Cyhoeddwyd: (2022)

Spatiotemporal heterogeneity of malnutrition indicators in children under 5 years of age in Bangladesh, 1999–2011
gan: Hasan, Md Tanvir, et al.
Cyhoeddwyd: (2022)

Humanitarian response coordination architecture in Bangladesh Rohingya refugee crisis operation: practice, challenges and prospects
gan: Ahmed, Khaled Masud
Cyhoeddwyd: (2019)

Inference of gene regulatory network with S-system and artificial Bee Colony algorithm
gan: Obayed Bin Mahfuz
Cyhoeddwyd: (2015)

Accelerating IP routing algorithm using graphics processing unit for high speed multimedia communication
gan: Uddin, Jia, et al.
Cyhoeddwyd: (2016)

Finding ideal geographical location for businesses using machine learning technique
gan: Mahmud, Mir Ibtid, et al.
Cyhoeddwyd: (2022)

Polymorphisms in glucocorticoid receptor gene: a susceptibility factor to Guillain-Barré syndrome in a Bangladeshi population
gan: Khurshid, Sarah
Cyhoeddwyd: (2020)

Performance of EPZs in Bangladesh: special focus on backward linkages
gan: Sulaiman, Munshi
Cyhoeddwyd: (2017)

Gene expression analysis using machine learning
gan: Mostafa, Naﬁs
Cyhoeddwyd: (2021)

Evaluation of a mathematics program for preprimary children in rural Bangladesh
gan: Opel, Aftab, et al.
Cyhoeddwyd: (2016)

The SI for the health professions : prepared at the request of the thirtieth World Health Assembly.
Cyhoeddwyd: (1977)

House Price Synchronization and Financial Openness : A Dynamic Factor Model Approach /
gan: Katagiri, Mitsuru
Cyhoeddwyd: (2018)

Assessing the water quality of canals in Dhaka city, Bangladesh
gan: Rahman, Md. Kholilur, et al.
Cyhoeddwyd: (2022)

To control site-specific skin gene expression, autocrine mimics paracrine canonical Wnt signaling and Is activated ectopically in skin disease
gan: Kim, Dongwon, et al.
Cyhoeddwyd: (2016)

A generic framework of three factor authentication with optional bio-metric or graphical password
gan: Hossain, Mohammad Naveed, et al.
Cyhoeddwyd: (2022)

Understanding university students’ fast food consumption behavior and associated health concern
gan: Chowdhury, Md. Ridowan, et al.
Cyhoeddwyd: (2018)

Unsupervised semantic segmentation for localization of wetland area fluctuations
gan: Tahsin, Anika, et al.
Cyhoeddwyd: (2024)

Patterns and trends in food consumption in poor urban and rural households in Bangladesh: cluster analysis of household survey data
gan: Halder, Shantana R, et al.
Cyhoeddwyd: (2020)

Erratum: Prenatal and postnatal supplementation with lipid-based nutrient supplements reduces anemia and iron deficiency in 18-month-old Bangladeshi children: A cluster-randomized effectiveness trial
gan: Matias, Susana L, et al.
Cyhoeddwyd: (2022)

Graph data mining-based community clustering for gender-biased community detection of social media
gan: Dev, Sanjoy, et al.
Cyhoeddwyd: (2023)

Downregulation of SOCS1 gene in the development of Guillain-Barré syndrome
gan: Khurshid, Sarah
Cyhoeddwyd: (2024)

Impact of COVID-19 : Nowcasting and Big Data to Track Economic Activity in Sub-Saharan Africa /
gan: Buell, Brandon
Cyhoeddwyd: (2021)

An approach to detect smartphone addiction through activity recognition and app usage behaviour
gan: Uz Zaman, Nur, et al.
Cyhoeddwyd: (2023)